Keep additional charge for product variant separate form product overide?

[jus2sho]

Is there a way to keep the product variant charge separate from the product price overide?  The way I see VM2 setup is that when you overide the price, that becomes your final price.  No matter what.  Even if there is a product variant that adds another charge to the product.  Is there a way to overide the price, but have the charge for the product variant added to the overided charge?